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POMT1 protein O-mannosyltransferase 1 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100931363, updated on 8-Mar-2024

Summary

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Gene symbol
POMT1
Gene description
protein O-mannosyltransferase 1
See related
Ensembl:ENSSHAG00000024319
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See POMT1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
22
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 2 NC_045427.1 (483203716..483245654)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 1 Unlocalized Scaffold NW_003816662.1 (2877476..2918483)

Chromosome 2 - NC_045427.1Genomic Context describing neighboring genes Neighboring gene proline rich coiled-coil 2B Neighboring gene small nucleolar RNA SNORD62 Neighboring gene uncharacterized LOC116421790 Neighboring gene uncharacterized LOC116421791 Neighboring gene uridine-cytidine kinase 1 Neighboring gene proline rich transmembrane protein 1B Neighboring gene Rap guanine nucleotide exchange factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045427.1 Reference mSarHar1.11 Primary Assembly

    Range
    483203716..483245654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012553951.3 → XP_012409405.1  protein O-mannosyl-transferase 1 isoform X1

    See identical proteins and their annotated locations for XP_012409405.1

    UniProtKB/TrEMBL
    A0A7N4NSE4, A0A7N4P4L3
    Related
    ENSSHAP00000027304.1, ENSSHAT00000039640.1
    Conserved Domains (1) summary
    COG1928
    Location:14 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  2. XM_031954868.1 → XP_031810728.1  protein O-mannosyl-transferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A7N4NSE4, A0A7N4P4L3
    Conserved Domains (1) summary
    COG1928
    Location:14 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  3. XM_003757411.4 → XP_003757459.1  protein O-mannosyl-transferase 1 isoform X1

    See identical proteins and their annotated locations for XP_003757459.1

    UniProtKB/TrEMBL
    A0A7N4NSE4, A0A7N4P4L3
    Related
    ENSSHAP00000031563.1, ENSSHAT00000041269.1
    Conserved Domains (1) summary
    COG1928
    Location:14 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  4. XM_031954869.1 → XP_031810729.1  protein O-mannosyl-transferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A7N4NSE4
    Conserved Domains (1) summary
    COG1928
    Location:2 → 666
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
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