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CSPG5 chondroitin sulfate proteoglycan 5 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100930589, updated on 8-Mar-2024

Summary

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Gene symbol
CSPG5
Gene description
chondroitin sulfate proteoglycan 5
See related
Ensembl:ENSSHAG00000004557
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See CSPG5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 1 NC_045426.1 (90994368..91009222, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 2 Unlocalized Scaffold NW_003823589.1 (110512..124784)

Chromosome 1 - NC_045426.1Genomic Context describing neighboring genes Neighboring gene SREBF chaperone Neighboring gene elongator acetyltransferase complex subunit 6 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit C1 Neighboring gene adenosylhomocysteinase pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate proteoglycan 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045426.1 Reference mSarHar1.11 Primary Assembly

    Range
    90994368..91009222 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031960815.1 → XP_031816675.1  chondroitin sulfate proteoglycan 5 isoform X4

    UniProtKB/TrEMBL
    G3VPV3
    Conserved Domains (2) summary
    pfam06566
    Location:69 → 321
    Chon_Sulph_att; Chondroitin sulphate attachment domain
    pfam06567
    Location:492 → 582
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain

  2. XM_031960800.1 → XP_031816660.1  chondroitin sulfate proteoglycan 5 isoform X2

    UniProtKB/TrEMBL
    G3VPV3
    Conserved Domains (2) summary
    pfam06566
    Location:69 → 321
    Chon_Sulph_att; Chondroitin sulphate attachment domain
    pfam06567
    Location:492 → 609
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain

  3. XM_031960808.1 → XP_031816668.1  chondroitin sulfate proteoglycan 5 isoform X3

    UniProtKB/TrEMBL
    G3VPV3
    Conserved Domains (2) summary
    pfam06566
    Location:69 → 321
    Chon_Sulph_att; Chondroitin sulphate attachment domain
    pfam06567
    Location:492 → 583
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain

  4. XM_031960793.1 → XP_031816653.1  chondroitin sulfate proteoglycan 5 isoform X1

    UniProtKB/TrEMBL
    G3VPV3
    Related
    ENSSHAP00000005208.2, ENSSHAT00000005260.2
    Conserved Domains (2) summary
    pfam06566
    Location:69 → 321
    Chon_Sulph_att; Chondroitin sulphate attachment domain
    pfam06567
    Location:492 → 610
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain
Nucleotide Protein
Heading Accession and Version

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