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CPT1B carnitine palmitoyltransferase 1B [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100930017, updated on 8-Mar-2024

Summary

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Gene symbol
CPT1B
Gene description
carnitine palmitoyltransferase 1B
See related
Ensembl:ENSSHAG00000003537
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See CPT1B in Genome Data Viewer
Location:
chromosome: 5
Exon count:
20
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 5 NC_045430.1 (7345548..7359296, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 5 Unlocalized Scaffold NW_003843556.1 (65873..77275, complement)

Chromosome 5 - NC_045430.1Genomic Context describing neighboring genes Neighboring gene kelch domain containing 7B Neighboring gene synaptonemal complex central element protein 3 Neighboring gene choline kinase beta Neighboring gene mitogen-activated protein kinase 8 interacting protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carnitine O-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carnitine O-palmitoyltransferase 1, muscle isoform

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045430.1 Reference mSarHar1.11 Primary Assembly

    Range
    7345548..7359296 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031940977.1 → XP_031796837.1  carnitine O-palmitoyltransferase 1, muscle isoform

    UniProtKB/TrEMBL
    A0A7N4V0Z5, G3VLF8
    Related
    ENSSHAP00000004013.1, ENSSHAT00000004053.2
    Conserved Domains (2) summary
    pfam00755
    Location:173 → 761
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
    pfam16484
    Location:1 → 47
    CPT_N; Carnitine O-palmitoyltransferase N-terminus

  2. XM_031940976.1 → XP_031796836.1  carnitine O-palmitoyltransferase 1, muscle isoform

    UniProtKB/TrEMBL
    A0A7N4V0Z5, G3VLF8
    Conserved Domains (2) summary
    pfam00755
    Location:173 → 761
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
    pfam16484
    Location:1 → 47
    CPT_N; Carnitine O-palmitoyltransferase N-terminus

  3. XM_031940975.1 → XP_031796835.1  carnitine O-palmitoyltransferase 1, muscle isoform

    UniProtKB/TrEMBL
    A0A7N4V0Z5, G3VLF8
    Conserved Domains (2) summary
    pfam00755
    Location:173 → 761
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
    pfam16484
    Location:1 → 47
    CPT_N; Carnitine O-palmitoyltransferase N-terminus
Nucleotide Protein
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