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PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100929845, updated on 8-Mar-2024

Summary

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Gene symbol
PAFAH1B1
Gene description
platelet activating factor acetylhydrolase 1b regulatory subunit 1
See related
Ensembl:ENSSHAG00000013409
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See PAFAH1B1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 4 NC_045429.1 (439614385..439684921)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 4 Unlocalized Scaffold NW_003839017.1 (1231093..1261973)

Chromosome 4 - NC_045429.1Genomic Context describing neighboring genes Neighboring gene protein transport protein sec31-like Neighboring gene uncharacterized LOC116423465 Neighboring gene methyltransferase 16, RNA N6-adenosine Neighboring gene clustered mitochondria homolog Neighboring gene coiled-coil domain containing 92B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPI vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
platelet-activating factor acetylhydrolase IB subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045429.1 Reference mSarHar1.11 Primary Assembly

    Range
    439614385..439684921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031967817.1 → XP_031823677.1  platelet-activating factor acetylhydrolase IB subunit alpha

    UniProtKB/TrEMBL
    G3WJX8
    Conserved Domains (3) summary
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:10 → 34
    LisH

  2. XM_031967815.1 → XP_031823675.1  platelet-activating factor acetylhydrolase IB subunit alpha

    UniProtKB/TrEMBL
    G3WJX8
    Related
    ENSSHAP00000015733.1, ENSSHAT00000015861.2
    Conserved Domains (3) summary
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:10 → 34
    LisH

  3. XM_031967816.1 → XP_031823676.1  platelet-activating factor acetylhydrolase IB subunit alpha

    UniProtKB/TrEMBL
    G3WJX8
    Conserved Domains (3) summary
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:10 → 34
    LisH
Nucleotide Protein
Heading Accession and Version

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