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AARS2 alanyl-tRNA synthetase 2, mitochondrial [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100929155, updated on 8-Mar-2024

Summary

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Gene symbol
AARS2
Gene description
alanyl-tRNA synthetase 2, mitochondrial
See related
Ensembl:ENSSHAG00000017514
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See AARS2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
24
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 4 NC_045429.1 (268054049..268071583)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 4 Unlocalized Scaffold NW_003838897.1 (2770262..2788780, complement)

Chromosome 4 - NC_045429.1Genomic Context describing neighboring genes Neighboring gene cell division cycle 5 like Neighboring gene spermatogenesis associated serine rich 1 Neighboring gene 60S ribosomal protein L11-like Neighboring gene t-complex-associated-testis-expressed 1 Neighboring gene transmembrane protein 151B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alanine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amino acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alanine--tRNA ligase, mitochondrial
Names
alanyl-tRNA synthetase 2, mitochondrial (putative)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045429.1 Reference mSarHar1.11 Primary Assembly

    Range
    268054049..268071583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031964760.1 → XP_031820620.1  alanine--tRNA ligase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A7N4P005
    Related
    ENSSHAP00000030185.1, ENSSHAT00000027331.1
    Conserved Domains (1) summary
    PLN02900
    Location:47 → 960
    PLN02900; alanyl-tRNA synthetase

  2. XM_003769087.4 → XP_003769135.1  alanine--tRNA ligase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    G3WYZ7
    Related
    ENSSHAP00000020652.1, ENSSHAT00000020817.2
    Conserved Domains (3) summary
    PLN02900
    Location:47 → 988
    PLN02900; alanyl-tRNA synthetase
    cd00673
    Location:47 → 285
    AlaRS_core; Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of ...
    cl08469
    Location:559 → 784
    tRNA_SAD; Threonyl and Alanyl tRNA synthetase second additional domain

  3. XM_031964761.1 → XP_031820621.1  alanine--tRNA ligase, mitochondrial isoform X3

    Conserved Domains (1) summary
    PLN02900
    Location:1 → 851
    PLN02900; alanyl-tRNA synthetase

  4. XM_031964762.1 → XP_031820622.1  alanine--tRNA ligase, mitochondrial isoform X3

    Conserved Domains (1) summary
    PLN02900
    Location:1 → 851
    PLN02900; alanyl-tRNA synthetase
Nucleotide Protein
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