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CNTN1 contactin 1 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100927706, updated on 8-Mar-2024

Summary

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Gene symbol
CNTN1
Gene description
contactin 1
See related
Ensembl:ENSSHAG00000003066
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See CNTN1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
26
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 5 NC_045430.1 (100288717..100537912)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 5 Unlocalized Scaffold NW_003843873.1 (56512..161190)

Chromosome 5 - NC_045430.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116419224 Neighboring gene tyrosyl-tRNA synthetase 2 Neighboring gene plakophilin 2 Neighboring gene glucoside xylosyltransferase 1 Neighboring gene CCR4-NOT transcription complex subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045430.1 Reference mSarHar1.11 Primary Assembly

    Range
    100288717..100537912
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031938160.1 → XP_031794020.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A7N4NQF2
    Related
    ENSSHAP00000003489.2, ENSSHAT00000003525.2
    Conserved Domains (7) summary
    cd05851
    Location:230 → 317
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00063
    Location:599 → 686
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:800 → 882
    fn3; Fibronectin type III domain
    cd00096
    Location:31 → 35
    Ig; Ig strand A [structural motif]
    cd04970
    Location:492 → 590
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:131 → 219
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cl11960
    Location:29 → 123
    Ig; Immunoglobulin domain

  2. XM_031938163.1 → XP_031794023.1  contactin-1 isoform X2

    Conserved Domains (5) summary
    cd05851
    Location:230 → 317
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00096
    Location:31 → 35
    Ig; Ig strand A [structural motif]
    cd04970
    Location:492 → 591
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:131 → 219
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cl11960
    Location:29 → 123
    Ig; Immunoglobulin domain

  3. XM_031938162.1 → XP_031794022.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A7N4NQF2
    Conserved Domains (7) summary
    cd05851
    Location:230 → 317
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00063
    Location:599 → 686
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:800 → 882
    fn3; Fibronectin type III domain
    cd00096
    Location:31 → 35
    Ig; Ig strand A [structural motif]
    cd04970
    Location:492 → 590
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:131 → 219
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cl11960
    Location:29 → 123
    Ig; Immunoglobulin domain

  4. XM_031938161.1 → XP_031794021.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A7N4NQF2
    Conserved Domains (7) summary
    cd05851
    Location:230 → 317
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00063
    Location:599 → 686
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:800 → 882
    fn3; Fibronectin type III domain
    cd00096
    Location:31 → 35
    Ig; Ig strand A [structural motif]
    cd04970
    Location:492 → 590
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:131 → 219
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cl11960
    Location:29 → 123
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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