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TRAPPC10 trafficking protein particle complex subunit 10 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100926471, updated on 8-Mar-2024

Summary

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Gene symbol
TRAPPC10
Gene description
trafficking protein particle complex subunit 10
See related
Ensembl:ENSSHAG00000003843
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See TRAPPC10 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
26
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 3 NC_045428.1 (240354503..240461227)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 3 Unlocalized Scaffold NW_003831542.1 (75041..185445, complement)

Chromosome 3 - NC_045428.1Genomic Context describing neighboring genes Neighboring gene ETS transcription factor ERG Neighboring gene ETS proto-oncogene 2, transcription factor Neighboring gene SR-related CTD associated factor 4 Neighboring gene superoxide dismutase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in early endosome to Golgi transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TRAPPII protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trafficking protein particle complex subunit 10
Names
trafficking protein particle complex 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045428.1 Reference mSarHar1.11 Primary Assembly

    Range
    240354503..240461227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031959287.1 → XP_031815147.1  trafficking protein particle complex subunit 10 isoform X4

    UniProtKB/TrEMBL
    G3VMG2
    Conserved Domains (1) summary
    pfam11817
    Location:459 → 548
    Foie-gras_1; Foie gras liver health family 1

  2. XM_031959283.1 → XP_031815143.1  trafficking protein particle complex subunit 10 isoform X1

    UniProtKB/TrEMBL
    A0A7N4NSC9, G3VMG1
    Related
    ENSSHAP00000027609.1, ENSSHAT00000026179.1
    Conserved Domains (2) summary
    pfam11817
    Location:459 → 548
    Foie-gras_1; Foie gras liver health family 1
    pfam12584
    Location:1044 → 1269
    TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10

  3. XM_031959284.1 → XP_031815144.1  trafficking protein particle complex subunit 10 isoform X2

    UniProtKB/TrEMBL
    A0A7N4NP45, G3VMG1
    Related
    ENSSHAP00000026362.1, ENSSHAT00000027950.1
    Conserved Domains (2) summary
    pfam11817
    Location:459 → 548
    Foie-gras_1; Foie gras liver health family 1
    pfam12584
    Location:1019 → 1244
    TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10

  4. XM_031959285.1 → XP_031815145.1  trafficking protein particle complex subunit 10 isoform X3

    UniProtKB/TrEMBL
    G3VMG1
    Conserved Domains (2) summary
    pfam11817
    Location:414 → 503
    Foie-gras_1; Foie gras liver health family 1
    pfam12584
    Location:999 → 1224
    TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10

  5. XM_031959286.1 → XP_031815146.1  trafficking protein particle complex subunit 10 isoform X3

    UniProtKB/TrEMBL
    G3VMG1
    Conserved Domains (2) summary
    pfam11817
    Location:414 → 503
    Foie-gras_1; Foie gras liver health family 1
    pfam12584
    Location:999 → 1224
    TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10
Nucleotide Protein
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