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VPS16 VPS16 core subunit of CORVET and HOPS complexes [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100925909, updated on 8-Mar-2024

Summary

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Gene symbol
VPS16
Gene description
VPS16 core subunit of CORVET and HOPS complexes
See related
Ensembl:ENSSHAG00000003874
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See VPS16 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
25
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 6 NC_045431.1 (192535933..192562867)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 6 Unlocalized Scaffold NW_003847076.1 (78212..89167, complement)

Chromosome 6 - NC_045431.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 239 Neighboring gene PC-esterase domain containing 1A Neighboring gene protein tyrosine phosphatase receptor type A Neighboring gene gonadotropin releasing hormone 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuole fusion, non-autophagic IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of HOPS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 16 homolog
Names
VPS16, CORVET/HOPS core subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045431.1 Reference mSarHar1.11 Primary Assembly

    Range
    192535933..192562867
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031944099.1 → XP_031799959.1  vacuolar protein sorting-associated protein 16 homolog isoform X1

    UniProtKB/TrEMBL
    A0A7N4PPA3, G3VMJ6
    Related
    ENSSHAP00000004401.2, ENSSHAT00000004447.2
    Conserved Domains (2) summary
    pfam04841
    Location:4 → 420
    Vps16_N; Vps16, N-terminal region
    pfam04840
    Location:517 → 834
    Vps16_C; Vps16, C-terminal region

  2. XM_012552983.3 → XP_012408437.1  vacuolar protein sorting-associated protein 16 homolog isoform X2

    UniProtKB/TrEMBL
    A0A7N4NUU2
    Related
    ENSSHAP00000028538.1, ENSSHAT00000046143.1
    Conserved Domains (2) summary
    pfam04841
    Location:1 → 396
    Vps16_N; Vps16, N-terminal region
    pfam04840
    Location:493 → 810
    Vps16_C; Vps16, C-terminal region
Nucleotide Protein
Heading Accession and Version

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