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VPS33A VPS33A core subunit of CORVET and HOPS complexes [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100925671, updated on 8-Mar-2024

Summary

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Gene symbol
VPS33A
Gene description
VPS33A core subunit of CORVET and HOPS complexes
See related
Ensembl:ENSSHAG00000027190
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See VPS33A in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 1 NC_045426.1 (686247475..686266264)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 2 Unlocalized Scaffold NW_003823452.1 (507997..527050, complement)

Chromosome 1 - NC_045426.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCHC-type containing 8 Neighboring gene CAP-Gly domain containing linker protein 1 Neighboring gene uncharacterized LOC116420824 Neighboring gene diablo IAP-binding mitochondrial protein Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CORVET complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 33A
Names
VPS33A, CORVET/HOPS core subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045426.1 Reference mSarHar1.11 Primary Assembly

    Range
    686247475..686266264
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003761049.4 → XP_003761097.1  vacuolar protein sorting-associated protein 33A

    UniProtKB/TrEMBL
    A0A7N4PDC3
    Related
    ENSSHAP00000035923.1, ENSSHAT00000031818.1
    Conserved Domains (1) summary
    pfam00995
    Location:34 → 584
    Sec1; Sec1 family
Nucleotide Protein
Heading Accession and Version

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