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STBD1 starch binding domain 1 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100923538, updated on 8-Mar-2024

Summary

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Gene symbol
STBD1
Gene description
starch binding domain 1
See related
Ensembl:ENSSHAG00000001426
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See STBD1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 6 NC_045431.1 (158871240..158878831, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 6 Unlocalized Scaffold NW_003846760.1 (11203..18728)

Chromosome 6 - NC_045431.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111721297 Neighboring gene heparanase Neighboring gene coiled-coil domain containing 158 Neighboring gene family with sequence similarity 47 member E Neighboring gene scavenger receptor class B member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
starch-binding domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045431.1 Reference mSarHar1.11 Primary Assembly

    Range
    158871240..158878831 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003772879.4 → XP_003772927.1  starch-binding domain-containing protein 1

    UniProtKB/TrEMBL
    G3VEJ6
    Related
    ENSSHAP00000001600.1, ENSSHAT00000001617.2
    Conserved Domains (1) summary
    cd05813
    Location:281 → 375
    CBM20_genethonin_1; Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch ...
Nucleotide Protein
Heading Accession and Version

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