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ABI1 abl interactor 1 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100923362, updated on 8-Mar-2024

Summary

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Gene symbol
ABI1
Gene description
abl interactor 1
See related
Ensembl:ENSSHAG00000011206
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See ABI1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 5 NC_045430.1 (227595500..227684199)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 5 Unlocalized Scaffold NW_003843692.1 (775013..863931)

Chromosome 5 - NC_045430.1Genomic Context describing neighboring genes Neighboring gene microtubule associated serine/threonine kinase like Neighboring gene acyl-CoA binding domain containing 5 Neighboring gene SNW domain-containing protein 1 pseudogene Neighboring gene uncharacterized LOC116419461 Neighboring gene decaprenyl diphosphate synthase subunit 1 Neighboring gene protein adenylyltransferase SelO

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
abl interactor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045430.1 Reference mSarHar1.11 Primary Assembly

    Range
    227595500..227684199
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031939839.1 → XP_031795699.1  abl interactor 1 isoform X9

    UniProtKB/TrEMBL
    A0A7N4V714, G3WCF2
    Related
    ENSSHAP00000043355.1, ENSSHAT00000036042.1
    Conserved Domains (2) summary
    cd11971
    Location:450 → 508
    SH3_Abi1; Src homology 3 domain of Abl Interactor 1
    pfam07815
    Location:93 → 156
    Abi_HHR; Abl-interactor HHR

  2. XM_031939840.1 → XP_031795700.1  abl interactor 1 isoform X10

    UniProtKB/TrEMBL
    A0A7N4PRX3
    Conserved Domains (2) summary
    cd11971
    Location:394 → 452
    SH3_Abi1; Src homology 3 domain of Abl Interactor 1
    pfam07815
    Location:93 → 156
    Abi_HHR; Abl-interactor HHR

  3. XM_031939832.1 → XP_031795692.1  abl interactor 1 isoform X3

    UniProtKB/TrEMBL
    A0A7N4NXD6, A0A7N4PRX3
    Related
    ENSSHAP00000029940.1, ENSSHAT00000038647.1
    Conserved Domains (2) summary
    cd11971
    Location:421 → 479
    SH3_Abi1; Src homology 3 domain of Abl Interactor 1
    pfam07815
    Location:93 → 156
    Abi_HHR; Abl-interactor HHR

  4. XM_031939831.1 → XP_031795691.1  abl interactor 1 isoform X2

    UniProtKB/TrEMBL
    A0A7N4V0Q8, G3WCF2
    Related
    ENSSHAP00000030287.1, ENSSHAT00000042448.1
    Conserved Domains (2) summary
    cd11971
    Location:423 → 481
    SH3_Abi1; Src homology 3 domain of Abl Interactor 1
    pfam07815
    Location:93 → 156
    Abi_HHR; Abl-interactor HHR

  5. XM_031939837.1 → XP_031795697.1  abl interactor 1 isoform X7

    UniProtKB/TrEMBL
    A0A7N4PRX3, A0A7N4V4B9
    Related
    ENSSHAP00000037727.1, ENSSHAT00000025390.1
    Conserved Domains (2) summary
    cd11971
    Location:335 → 393
    SH3_Abi1; Src homology 3 domain of Abl Interactor 1
    pfam07815
    Location:93 → 156
    Abi_HHR; Abl-interactor HHR

  6. XM_031939830.1 → XP_031795690.1  abl interactor 1 isoform X1

    UniProtKB/TrEMBL
    A0A7N4PNB4, A0A7N4PRX3
    Related
    ENSSHAP00000041077.1, ENSSHAT00000047487.1
    Conserved Domains (2) summary
    cd11971
    Location:445 → 503
    SH3_Abi1; Src homology 3 domain of Abl Interactor 1
    pfam07815
    Location:93 → 154
    Abi_HHR; Abl-interactor HHR

  7. XM_031939834.1 → XP_031795694.1  abl interactor 1 isoform X4

    UniProtKB/TrEMBL
    G3WCF2
    Conserved Domains (2) summary
    cd11971
    Location:418 → 476
    SH3_Abi1; Src homology 3 domain of Abl Interactor 1
    pfam07815
    Location:93 → 154
    Abi_HHR; Abl-interactor HHR

  8. XM_031939835.1 → XP_031795695.1  abl interactor 1 isoform X5

    UniProtKB/TrEMBL
    A0A7N4PRX3
    Conserved Domains (2) summary
    cd11971
    Location:389 → 447
    SH3_Abi1; Src homology 3 domain of Abl Interactor 1
    pfam07815
    Location:93 → 154
    Abi_HHR; Abl-interactor HHR

  9. XM_031939838.1 → XP_031795698.1  abl interactor 1 isoform X8

    UniProtKB/TrEMBL
    A0A7N4PRX3
    Related
    ENSSHAP00000041515.1, ENSSHAT00000047743.1
    Conserved Domains (2) summary
    cd11971
    Location:330 → 388
    SH3_Abi1; Src homology 3 domain of Abl Interactor 1
    pfam07815
    Location:93 → 154
    Abi_HHR; Abl-interactor HHR

  10. XM_031939836.1 → XP_031795696.1  abl interactor 1 isoform X6

    Conserved Domains (2) summary
    cd11971
    Location:365 → 423
    SH3_Abi1; Src homology 3 domain of Abl Interactor 1
    pfam07815
    Location:8 → 71
    Abi_HHR; Abl-interactor HHR
Nucleotide Protein
Heading Accession and Version

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