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TKTL1 transketolase like 1 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100921816, updated on 8-Mar-2024

Summary

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Gene symbol
TKTL1
Gene description
transketolase like 1
See related
Ensembl:ENSSHAG00000010031
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See TKTL1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
14
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) X NC_045432.1 (12294408..12326444, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) X Unlocalized Scaffold NW_003849593.1 (627424..659420)

Chromosome X - NC_045432.1Genomic Context describing neighboring genes Neighboring gene mortality factor 4-like protein 1 pseudogene Neighboring gene protein bicaudal D homolog 2 Neighboring gene red-sensitive opsin Neighboring gene testis expressed 28

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transketolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transketolase-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045432.1 Reference mSarHar1.11 Primary Assembly

    Range
    12294408..12326444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003774722.4 → XP_003774770.1  transketolase-like protein 1

    UniProtKB/TrEMBL
    A0A7N4NQ59, G3W8C3
    Related
    ENSSHAP00000011678.2, ENSSHAT00000011774.2
    Conserved Domains (4) summary
    cd07033
    Location:322 → 477
    TPP_PYR_DXS_TK_like; Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins
    PRK05899
    Location:8 → 623
    PRK05899; transketolase; Reviewed
    cd02012
    Location:20 → 270
    TPP_TK; Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the ...
    pfam02780
    Location:493 → 615
    Transketolase_C; Transketolase, C-terminal domain
Nucleotide Protein
Heading Accession and Version

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