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ARL5A ARF like GTPase 5A [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100920972, updated on 20-Sep-2024

Summary

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Gene symbol
ARL5A
Gene description
ARF like GTPase 5A
See related
Ensembl:ENSSHAG00000028834
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See ARL5A in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 3 NC_045428.1 (425033368..425061638)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 3 Unlocalized Scaffold NW_003831630.1 (4092511..4116158, complement)

Chromosome 3 - NC_045428.1Genomic Context describing neighboring genes Neighboring gene signal transducing adaptor molecule 2 Neighboring gene calcium voltage-gated channel auxiliary subunit beta 4 Neighboring gene nebulin Neighboring gene replication timing regulatory factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADP-ribosylation factor-like protein 5A
Names
ADP ribosylation factor like GTPase 5A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045428.1 Reference mSarHar1.11 Primary Assembly

    Range
    425033368..425061638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031960683.1 → XP_031816543.1  ADP-ribosylation factor-like protein 5A isoform X1

    Conserved Domains (1) summary
    cd04153
    Location:3 → 175
    Arl5_Arl8; Arf-like 5 (Arl5) and 8 (Arl8) GTPases

  2. XM_003763852.4 → XP_003763900.2  ADP-ribosylation factor-like protein 5A isoform X2

    Related
    ENSSHAT00000047509.1
    Conserved Domains (1) summary
    cl38936
    Location:12 → 149
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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