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RAB3D RAB3D, member RAS oncogene family [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100920099, updated on 8-Mar-2024

Summary

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Gene symbol
RAB3D
Gene description
RAB3D, member RAS oncogene family
See related
Ensembl:ENSSHAG00000029516
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See RAB3D in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 1 NC_045426.1 (648310527..648325157, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 2 Unlocalized Scaffold NW_003823412.1 (287114..298099)

Chromosome 1 - NC_045426.1Genomic Context describing neighboring genes Neighboring gene dedicator of cytokinesis 6 Neighboring gene angiopoietin like 8 Neighboring gene tetraspanin 16 Neighboring gene coiled-coil domain containing 159 Neighboring gene transmembrane protein 205 Neighboring gene phospholipid phosphatase related 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking involved in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-3D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045426.1 Reference mSarHar1.11 Primary Assembly

    Range
    648310527..648325157 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012541885.3 → XP_012397339.1  ras-related protein Rab-3D isoform X2

    See identical proteins and their annotated locations for XP_012397339.1

    Conserved Domains (2) summary
    smart00175
    Location:23 → 183
    RAB; Rab subfamily of small GTPases
    cd01865
    Location:22 → 186
    Rab3; Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

  2. XM_012541884.3 → XP_012397338.1  ras-related protein Rab-3D isoform X2

    See identical proteins and their annotated locations for XP_012397338.1

    Conserved Domains (2) summary
    smart00175
    Location:23 → 183
    RAB; Rab subfamily of small GTPases
    cd01865
    Location:22 → 186
    Rab3; Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

  3. XM_012541882.3 → XP_012397336.1  ras-related protein Rab-3D isoform X2

    See identical proteins and their annotated locations for XP_012397336.1

    Conserved Domains (2) summary
    smart00175
    Location:23 → 183
    RAB; Rab subfamily of small GTPases
    cd01865
    Location:22 → 186
    Rab3; Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

  4. XM_003760440.4 → XP_003760488.2  ras-related protein Rab-3D isoform X1

    UniProtKB/TrEMBL
    A0A7N4NRJ5
    Related
    ENSSHAP00000027408.1, ENSSHAT00000035427.1
    Conserved Domains (2) summary
    smart00175
    Location:24 → 184
    RAB; Rab subfamily of small GTPases
    cd01865
    Location:23 → 187
    Rab3; Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D
Nucleotide Protein
Heading Accession and Version

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