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SDCBP2 syndecan binding protein 2 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100917214, updated on 8-Mar-2024

Summary

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Gene symbol
SDCBP2
Gene description
syndecan binding protein 2
See related
Ensembl:ENSSHAG00000012754
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See SDCBP2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 2 NC_045427.1 (435642680..435668152, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 1 Unlocalized Scaffold NW_003816640.1 (1094249..1119450, complement)

Chromosome 2 - NC_045427.1Genomic Context describing neighboring genes Neighboring gene RAD21 cohesin complex component like 1 Neighboring gene syntaphilin Neighboring gene solute carrier family 52, riboflavin transporter, member 3-like Neighboring gene FKBP prolyl isomerase 1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntenin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045427.1 Reference mSarHar1.11 Primary Assembly

    Range
    435642680..435668152 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012553635.3 → XP_012409089.1  syntenin-2

    UniProtKB/TrEMBL
    G3WHP3
    Related
    ENSSHAP00000014948.1, ENSSHAT00000015073.2
    Conserved Domains (1) summary
    cd00992
    Location:105 → 184
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

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