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AHNAK2 AHNAK nucleoprotein 2 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100916682, updated on 8-Mar-2024

Summary

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Gene symbol
AHNAK2
Gene description
AHNAK nucleoprotein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See AHNAK2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 2 NC_045427.1 (351953406..352073181)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 1 Unlocalized Scaffold NW_003816592.1 (171949..191415)

Chromosome 2 - NC_045427.1Genomic Context describing neighboring genes Neighboring gene heat shock protein family A (Hsp70) member 4 Neighboring gene clathrin binding box of aftiphilin containing 1 Neighboring gene G kinase-anchoring protein 1 pseudogene Neighboring gene phospholipase D family member 4 Neighboring gene centrosomal protein 170B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in costamere IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein AHNAK2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045427.1 Reference mSarHar1.11 Primary Assembly

    Range
    351953406..352073181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031953124.1 → XP_031808984.1  protein AHNAK2 isoform X1

    Conserved Domains (2) summary
    cd00992
    Location:107 → 180
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    NF033838
    Location:670 → 1027
    PspC_subgroup_1; pneumococcal surface protein PspC, choline-binding form

  2. XM_031953125.1 → XP_031808985.1  protein AHNAK2 isoform X2

    Conserved Domains (2) summary
    cd00992
    Location:107 → 180
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    NF033838
    Location:670 → 1027
    PspC_subgroup_1; pneumococcal surface protein PspC, choline-binding form

  3. XM_031953128.1 → XP_031808988.1  protein AHNAK2 isoform X5

  4. XM_031953127.1 → XP_031808987.1  protein AHNAK2 isoform X4

    Conserved Domains (1) summary
    COG2911
    Location:718 → 1685
    TamB; Autotransporter translocation and assembly factor TamB [Intracellular trafficking, secretion, and vesicular transport]

  5. XM_031953126.1 → XP_031808986.1  protein AHNAK2 isoform X3

  6. XM_031953129.1 → XP_031808989.1  protein AHNAK2 isoform X6

Nucleotide Protein
Heading Accession and Version

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