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RAB13 RAB13, member RAS oncogene family [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100916293, updated on 8-Mar-2024

Summary

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Gene symbol
RAB13
Gene description
RAB13, member RAS oncogene family
See related
Ensembl:ENSSHAG00000025661
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See RAB13 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 4 NC_045429.1 (356118503..356126258, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 4 Unlocalized Scaffold NW_003838831.1 (923341..931295, complement)

Chromosome 4 - NC_045429.1Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein 3 like 4 Neighboring gene jumping translocation breakpoint Neighboring gene nucleoporin 210 like Neighboring gene ribosomal protein S27 Neighboring gene uncharacterized LOC116423337

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi vesicle fusion to target membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to insulin stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking involved in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045429.1 Reference mSarHar1.11 Primary Assembly

    Range
    356118503..356126258 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012548115.3 → XP_012403569.1  ras-related protein Rab-13 isoform X1

    UniProtKB/TrEMBL
    A0A7N4P3I7
    Related
    ENSSHAP00000031685.1, ENSSHAT00000041894.1
    Conserved Domains (2) summary
    smart00175
    Location:9 → 170
    RAB; Rab subfamily of small GTPases
    cd01867
    Location:6 → 172
    Rab8_Rab10_Rab13_like; Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

  2. XM_031966616.1 → XP_031822476.1  ras-related protein Rab-13 isoform X2

    UniProtKB/TrEMBL
    A0A7N4NMD1
    Related
    ENSSHAP00000025557.1, ENSSHAT00000039991.1
    Conserved Domains (1) summary
    cl38936
    Location:1 → 91
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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