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AP1S1 adaptor related protein complex 1 subunit sigma 1 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100916131, updated on 8-Mar-2024

Summary

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Gene symbol
AP1S1
Gene description
adaptor related protein complex 1 subunit sigma 1
See related
Ensembl:ENSSHAG00000031211
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See AP1S1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 4 NC_045429.1 (288455127..288462360)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 4 Unlocalized Scaffold NW_003838874.1 (80333..84722, complement)

Chromosome 4 - NC_045429.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116423227 Neighboring gene serpin family E member 1 Neighboring gene uncharacterized LOC105750429 Neighboring gene VGF nerve growth factor inducible Neighboring gene monoacylglycerol O-acyltransferase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AP-1 adaptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AP-1 complex subunit sigma-1A
Names
adaptor related protein complex 1 sigma 1 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045429.1 Reference mSarHar1.11 Primary Assembly

    Range
    288455127..288462360
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031965359.1 → XP_031821219.1  AP-1 complex subunit sigma-1A isoform X1

    UniProtKB/TrEMBL
    A0A7N4UYF5
    Conserved Domains (1) summary
    cd14831
    Location:2 → 144
    AP1_sigma; AP-1 complex subunit sigma

  2. XM_031965361.1 → XP_031821221.1  AP-1 complex subunit sigma-1A isoform X2

    UniProtKB/TrEMBL
    G3WIY8
    Related
    ENSSHAP00000025478.1, ENSSHAT00000029647.1
    Conserved Domains (1) summary
    cd14831
    Location:3 → 145
    AP1_sigma; AP-1 complex subunit sigma

  3. XM_031965362.1 → XP_031821222.1  AP-1 complex subunit sigma-1A isoform X3

    UniProtKB/TrEMBL
    A0A7N4NXP2
    Related
    ENSSHAP00000029165.1, ENSSHAT00000046537.1
    Conserved Domains (1) summary
    cd14831
    Location:3 → 145
    AP1_sigma; AP-1 complex subunit sigma

  4. XM_031965360.1 → XP_031821220.1  AP-1 complex subunit sigma-1A isoform X1

    UniProtKB/TrEMBL
    A0A7N4UYF5
    Related
    ENSSHAP00000025510.1, ENSSHAT00000046126.1
    Conserved Domains (1) summary
    cd14831
    Location:2 → 144
    AP1_sigma; AP-1 complex subunit sigma
Nucleotide Protein
Heading Accession and Version

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