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LOC100915609 putative protein PTGES3L [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100915609, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100915609
Gene description
putative protein PTGES3L
See related
Ensembl:ENSSHAG00000012128
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Also known as
AARSD1; PTGES3L
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Genomic context

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See LOC100915609 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
22
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 4 NC_045429.1 (338491668..338508571, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 4 Unlocalized Scaffold NW_003838833.1 (981547..990345)

Chromosome 4 - NC_045429.1Genomic Context describing neighboring genes Neighboring gene glucose-6-phosphatase catalytic subunit 1 Neighboring gene splicing factor, proline- and glutamine-rich Neighboring gene TATA-box binding protein associated factor 9 Neighboring gene RUN domain containing 1 Neighboring gene ribosomal protein L27 Neighboring gene interferon induced protein 35

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Hsp90 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Ser-tRNA(Ala) hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-folding chaperone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chaperone-mediated protein complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of translational fidelity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alanyl-tRNA editing protein Aarsd1; putative protein PTGES3L
Names
alanyl-tRNA synthetase domain containing 1
prostaglandin E synthase 3 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045429.1 Reference mSarHar1.11 Primary Assembly

    Range
    338491668..338508571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031966339.1 → XP_031822199.1  alanyl-tRNA editing protein Aarsd1 isoform X4

    Conserved Domains (3) summary
    cd00237
    Location:55 → 160
    p23; p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
    COG0013
    Location:159 → 591
    AlaS; Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
    COG2872
    Location:226 → 431
    AlaX; Ser-tRNA(Ala) deacylase AlaX (editing enzyme) [Translation, ribosomal structure and biogenesis]

  2. XM_012548249.3 → XP_012403703.1  alanyl-tRNA editing protein Aarsd1 isoform X1

    UniProtKB/TrEMBL
    G3WFI1
    Related
    ENSSHAP00000014186.2, ENSSHAT00000014304.2
    Conserved Domains (2) summary
    COG2872
    Location:1 → 250
    AlaX; Ser-tRNA(Ala) deacylase AlaX (editing enzyme) [Translation, ribosomal structure and biogenesis]
    cl08469
    Location:45 → 243
    tRNA_SAD; Threonyl and Alanyl tRNA synthetase second additional domain

  3. XM_031966338.1 → XP_031822198.1  putative protein PTGES3L isoform X2

    Conserved Domains (1) summary
    cd00237
    Location:55 → 160
    p23; p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

  4. XM_012548250.3 → XP_012403704.2  putative protein PTGES3L isoform X3

    Conserved Domains (1) summary
    cd00237
    Location:55 → 160
    p23; p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Nucleotide Protein
Heading Accession and Version

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