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GALC galactosylceramidase [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100915302, updated on 8-Mar-2024

Summary

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Gene symbol
GALC
Gene description
galactosylceramidase
See related
Ensembl:ENSSHAG00000001514
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See GALC in Genome Data Viewer
Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 2 NC_045427.1 (288340388..288404675)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 1 Unlocalized Scaffold NW_003816911.1 (12303..88272)

Chromosome 2 - NC_045427.1Genomic Context describing neighboring genes Neighboring gene potassium two pore domain channel subfamily K member 10 Neighboring gene G protein-coupled receptor 65 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC111720342

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylceramidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in galactosylceramide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactocerebrosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045427.1 Reference mSarHar1.11 Primary Assembly

    Range
    288340388..288404675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003758827.4 → XP_003758875.1  galactocerebrosidase isoform X1

    UniProtKB/TrEMBL
    A0A7N4NKH4, G3VEU4
    Related
    ENSSHAP00000001698.1, ENSSHAT00000001715.2
    Conserved Domains (2) summary
    pfam02057
    Location:48 → 695
    Glyco_hydro_59; Glycosyl hydrolase family 59
    cl23815
    Location:149 → 369
    Glyco_hydro_30; O-Glycosyl hydrolase family 30

  2. XM_031952407.1 → XP_031808267.1  galactocerebrosidase isoform X2

    UniProtKB/TrEMBL
    A0A7N4NKH4
    Conserved Domains (2) summary
    pfam02057
    Location:1 → 233
    Glyco_hydro_59; Glycosyl hydrolase family 59
    pfam17387
    Location:241 → 357
    Glyco_hydro_59M; Glycosyl hydrolase family 59 central domain
Nucleotide Protein
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