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IFIH1 interferon induced with helicase C domain 1 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100915060, updated on 8-Mar-2024

Summary

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Gene symbol
IFIH1
Gene description
interferon induced with helicase C domain 1
See related
Ensembl:ENSSHAG00000017981
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See IFIH1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 3 NC_045428.1 (413078784..413167637)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 3 Unlocalized Scaffold NW_003831637.1 (3149561..3243957, complement)

Chromosome 3 - NC_045428.1Genomic Context describing neighboring genes Neighboring gene grancalcin Neighboring gene protein mago nashi homolog pseudogene Neighboring gene fibroblast activation protein alpha Neighboring gene glucagon

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of interferon-beta production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon-induced helicase C domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045428.1 Reference mSarHar1.11 Primary Assembly

    Range
    413078784..413167637
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012544752.3 → XP_012400206.1  interferon-induced helicase C domain-containing protein 1

    UniProtKB/TrEMBL
    A0A7N4PHM5, G3X0K5
    Related
    ENSSHAP00000021210.2, ENSSHAT00000021382.2
    Conserved Domains (6) summary
    COG1111
    Location:310 → 867
    MPH1; ERCC4-related helicase [Replication, recombination and repair]
    cd15807
    Location:894 → 1010
    MDA5_C; C-terminal domain of Melanoma differentiation-associated protein 5, a cytoplasmic viral RNA receptor
    cd12090
    Location:549 → 684
    MDA5_ID; Insert domain of MDA5
    pfam00271
    Location:691 → 817
    Helicase_C; Helicase conserved C-terminal domain
    pfam04851
    Location:306 → 492
    ResIII; Type III restriction enzyme, res subunit
    cl14633
    Location:8 → 99
    DD; Death Domain Superfamily of protein-protein interaction domains
Nucleotide Protein
Heading Accession and Version

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