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AP1S2 adaptor related protein complex 1 subunit sigma 2 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100914815, updated on 8-Mar-2024

Summary

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Gene symbol
AP1S2
Gene description
adaptor related protein complex 1 subunit sigma 2
See related
Ensembl:ENSSHAG00000013119
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See AP1S2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 3 NC_045428.1 (196611081..196642782)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 3 Unlocalized Scaffold NW_003831817.1 (1171614..1200429)

Chromosome 3 - NC_045428.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116422306 Neighboring gene uncharacterized LOC116423080 Neighboring gene zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 Neighboring gene carbonic anhydrase 5B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AP-1 adaptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AP-1 complex subunit sigma-2
Names
adaptor related protein complex 1 sigma 2 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045428.1 Reference mSarHar1.11 Primary Assembly

    Range
    196611081..196642782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031958954.1 → XP_031814814.1  AP-1 complex subunit sigma-2 isoform X1

    UniProtKB/TrEMBL
    A0A7N4PQJ1
    Conserved Domains (1) summary
    cd14831
    Location:3 → 145
    AP1_sigma; AP-1 complex subunit sigma

  2. XM_031958960.1 → XP_031814820.1  AP-1 complex subunit sigma-2 isoform X5

    UniProtKB/TrEMBL
    A0A7N4PVT4
    Related
    ENSSHAP00000027986.1, ENSSHAT00000030466.1
    Conserved Domains (1) summary
    cd14831
    Location:3 → 143
    AP1_sigma; AP-1 complex subunit sigma

  3. XM_031958959.1 → XP_031814819.1  AP-1 complex subunit sigma-2 isoform X4

    UniProtKB/TrEMBL
    A0A7N4PVT4, G3WIY7
    Related
    ENSSHAP00000015392.2, ENSSHAT00000015519.2
    Conserved Domains (1) summary
    cd14831
    Location:3 → 144
    AP1_sigma; AP-1 complex subunit sigma

  4. XM_031958958.1 → XP_031814818.1  AP-1 complex subunit sigma-2 isoform X3

    UniProtKB/TrEMBL
    A0A7N4PQJ1
    Related
    ENSSHAP00000040515.1, ENSSHAT00000042283.1
    Conserved Domains (1) summary
    cd14831
    Location:3 → 145
    AP1_sigma; AP-1 complex subunit sigma

  5. XM_031958957.1 → XP_031814817.1  AP-1 complex subunit sigma-2 isoform X2

    UniProtKB/TrEMBL
    A0A7N4PQJ1
    Conserved Domains (1) summary
    cd14831
    Location:2 → 144
    AP1_sigma; AP-1 complex subunit sigma

  6. XM_031958955.1 → XP_031814815.1  AP-1 complex subunit sigma-2 isoform X2

    UniProtKB/TrEMBL
    A0A7N4PQJ1
    Conserved Domains (1) summary
    cd14831
    Location:2 → 144
    AP1_sigma; AP-1 complex subunit sigma

  7. XM_031958956.1 → XP_031814816.1  AP-1 complex subunit sigma-2 isoform X2

    UniProtKB/TrEMBL
    A0A7N4PQJ1
    Conserved Domains (1) summary
    cd14831
    Location:2 → 144
    AP1_sigma; AP-1 complex subunit sigma
Nucleotide Protein
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