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LOC100914382 caspase-13 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100914382, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100914382
Gene description
caspase-13
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
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Genomic context

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See LOC100914382 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 3 NC_045428.1 (479963655..479990972, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 3 Unlocalized Scaffold NW_003832269.1 (394803..422349, complement)

Chromosome 3 - NC_045428.1Genomic Context describing neighboring genes Neighboring gene caspase-12-like Neighboring gene caspase-4 Neighboring gene caspase-1 Neighboring gene caspase-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
caspase-13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045428.1 Reference mSarHar1.11 Primary Assembly

    Range
    479963655..479990972 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012546960.3 → XP_012402414.1  caspase-13

    Conserved Domains (2) summary
    smart00115
    Location:132 → 380
    CASc; Caspase, interleukin-1 beta converting enzyme (ICE) homologues
    cl14633
    Location:7 → 82
    DD; Death Domain Superfamily of protein-protein interaction domains
Nucleotide Protein
Heading Accession and Version

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