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GALNT12 polypeptide N-acetylgalactosaminyltransferase 12 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100914362, updated on 8-Mar-2024

Summary

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Gene symbol
GALNT12
Gene description
polypeptide N-acetylgalactosaminyltransferase 12
See related
Ensembl:ENSSHAG00000017474
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See GALNT12 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 1 NC_045426.1 (328095425..328141706)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 2 Unlocalized Scaffold NW_003823555.1 (2740163..2785486, complement)

Chromosome 1 - NC_045426.1Genomic Context describing neighboring genes Neighboring gene pre-B-cell leukemia transcription factor 1-like Neighboring gene glucosaminyl (N-acetyl) transferase 1 Neighboring gene ankyrin repeat and sterile alpha motif domain containing 6 Neighboring gene collagen type XV alpha 1 chain Neighboring gene transforming growth factor beta receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 12
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045426.1 Reference mSarHar1.11 Primary Assembly

    Range
    328095425..328141706
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012543098.3 → XP_012398552.2  polypeptide N-acetylgalactosaminyltransferase 12

    UniProtKB/TrEMBL
    G3WYU9
    Related
    ENSSHAP00000020604.2, ENSSHAT00000020769.2
    Conserved Domains (2) summary
    cd02510
    Location:159 → 453
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:467 → 596
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
Heading Accession and Version

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