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PTGDS prostaglandin D2 synthase [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100913465, updated on 8-Mar-2024

Summary

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Gene symbol
PTGDS
Gene description
prostaglandin D2 synthase
See related
Ensembl:ENSSHAG00000008790
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See PTGDS in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 2 NC_045427.1 (248984103..248988886, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 1 Unlocalized Scaffold NW_003816668.1 (464622..469466)

Chromosome 2 - NC_045427.1Genomic Context describing neighboring genes Neighboring gene PAXX non-homologous end joining factor Neighboring gene lipocalin like 1 Neighboring gene neutrophil gelatinase-associated lipocalin Neighboring gene F-box and WD repeat domain containing 5 Neighboring gene complement C8 gamma chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prostaglandin-H2 D-isomerase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045427.1 Reference mSarHar1.11 Primary Assembly

    Range
    248984103..248988886 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023494378.2 → XP_023350146.1  prostaglandin-H2 D-isomerase isoform X1

    UniProtKB/TrEMBL
    A0A7N4P6Y6, G3W419
    Related
    ENSSHAP00000033152.1, ENSSHAT00000030369.1
    Conserved Domains (1) summary
    pfam00061
    Location:42 → 205
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

  2. XM_023494377.2 → XP_023350145.1  prostaglandin-H2 D-isomerase isoform X1

    UniProtKB/TrEMBL
    A0A7N4P6Y6, G3W419
    Related
    ENSSHAP00000025509.1, ENSSHAT00000040232.1
    Conserved Domains (1) summary
    pfam00061
    Location:42 → 205
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

  3. XM_003757509.4 → XP_003757557.1  prostaglandin-H2 D-isomerase isoform X2

    See identical proteins and their annotated locations for XP_003757557.1

    UniProtKB/TrEMBL
    G3W418
    Conserved Domains (1) summary
    cd19419
    Location:32 → 189
    lipocalin_L-PGDS; lipocalin-type prostaglandin D synthase

  4. XM_031951964.1 → XP_031807824.1  prostaglandin-H2 D-isomerase isoform X2

    UniProtKB/TrEMBL
    G3W418
    Related
    ENSSHAP00000010173.2, ENSSHAT00000010262.2
    Conserved Domains (1) summary
    cd19419
    Location:32 → 189
    lipocalin_L-PGDS; lipocalin-type prostaglandin D synthase
Nucleotide Protein
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