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FREM1 FRAS1 related extracellular matrix 1 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100913317, updated on 8-Mar-2024

Summary

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Gene symbol
FREM1
Gene description
FRAS1 related extracellular matrix 1
See related
Ensembl:ENSSHAG00000017309
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See FREM1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
37
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 1 NC_045426.1 (106102206..106253859)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 2 Unlocalized Scaffold NW_003823579.1 (2631422..2782045, complement)

Chromosome 1 - NC_045426.1Genomic Context describing neighboring genes Neighboring gene small nuclear RNA activating complex polypeptide 3 Neighboring gene tetratricopeptide repeat domain 39B Neighboring gene zinc finger DHHC-type palmitoyltransferase 21 Neighboring gene uncharacterized LOC116420661 Neighboring gene cerberus 1, DAN family BMP antagonist

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell communication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
FRAS1-related extracellular matrix protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045426.1 Reference mSarHar1.11 Primary Assembly

    Range
    106102206..106253859
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012543371.3 → XP_012398825.1  FRAS1-related extracellular matrix protein 1 isoform X1

    UniProtKB/TrEMBL
    G3WYA2
    Related
    ENSSHAP00000020407.2, ENSSHAT00000020568.2
    Conserved Domains (3) summary
    smart00034
    Location:2054 → 2176
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    pfam16184
    Location:357 → 501
    Cadherin_3; Cadherin-like
    cl02522
    Location:1742 → 1828
    Calx-beta; Calx-beta domain

  2. XM_031946382.1 → XP_031802242.1  FRAS1-related extracellular matrix protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A7N4P7P3
    Related
    ENSSHAP00000033485.1, ENSSHAT00000029348.1
    Conserved Domains (3) summary
    smart00034
    Location:1998 → 2120
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    pfam16184
    Location:1488 → 1596
    Cadherin_3; Cadherin-like
    cl02522
    Location:1742 → 1828
    Calx-beta; Calx-beta domain

  3. XM_031946431.1 → XP_031802291.1  FRAS1-related extracellular matrix protein 1 isoform X3

    Conserved Domains (1) summary
    pfam16184
    Location:396 → 501
    Cadherin_3; Cadherin-like

  4. XM_031946500.1 → XP_031802360.1  FRAS1-related extracellular matrix protein 1 isoform X4

    Conserved Domains (1) summary
    pfam16184
    Location:396 → 501
    Cadherin_3; Cadherin-like

  5. XM_031946556.1 → XP_031802416.1  FRAS1-related extracellular matrix protein 1 isoform X5

    Conserved Domains (1) summary
    pfam16184
    Location:396 → 501
    Cadherin_3; Cadherin-like

  6. XM_031946624.1 → XP_031802484.1  FRAS1-related extracellular matrix protein 1 isoform X6

  7. XM_031946680.1 → XP_031802540.1  FRAS1-related extracellular matrix protein 1 isoform X6

Nucleotide Protein
Heading Accession and Version

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