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LOC100890210 heparan sulfate glucosamine 3-O-sulfotransferase 1 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 100890210, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100890210
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC100890210 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145606.1 (23667900..23674936)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577196.1 (318461..321987, complement)

NW_022145606.1Genomic Context describing neighboring genes Neighboring gene tripartite motif-containing protein 12A-like Neighboring gene zinc-binding protein A33-like Neighboring gene carbohydrate sulfotransferase 11 Neighboring gene heparan sulfate glucosamine 3-O-sulfotransferase 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145606.1 Reference Spur_5.0 Primary Assembly

    Range
    23667900..23674936
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011673929.2 → XP_011672231.1  heparan sulfate glucosamine 3-O-sulfotransferase 1

    UniProtKB/TrEMBL
    A0A7M7HFV0
    Conserved Domains (1) summary
    cl21551
    Location:95 → 346
    Sulfotransfer_3; Sulfotransferase family

  2. XM_030993063.1 → XP_030848923.1  heparan sulfate glucosamine 3-O-sulfotransferase 1

    UniProtKB/TrEMBL
    A0A7M7HFV0
    Conserved Domains (1) summary
    cl21551
    Location:95 → 346
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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