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LOC100889492 galactosylceramide sulfotransferase [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 100889492, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100889492
Gene description
galactosylceramide sulfotransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC100889492 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145597.1 (20914847..20928780)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577583.1 (126300..135343)

NW_022145597.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115922697 Neighboring gene galactosylceramide sulfotransferase-like Neighboring gene galactose-3-O-sulfotransferase 3-like Neighboring gene uncharacterized LOC105444593 Neighboring gene uncharacterized LOC105438370 Neighboring gene netrin receptor UNC5B-b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylceramide sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactosylceramide sulfotransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145597.1 Reference Spur_5.0 Primary Assembly

    Range
    20914847..20928780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030982084.1 → XP_030837944.1  galactosylceramide sulfotransferase

    UniProtKB/TrEMBL
    A0A7M7NKM7
    Conserved Domains (1) summary
    cl22970
    Location:73 → 354
    Sulfotransfer_2; Sulfotransferase family

  2. XM_030982083.1 → XP_030837943.1  galactosylceramide sulfotransferase

    UniProtKB/TrEMBL
    A0A7M7NKM7
    Conserved Domains (1) summary
    cl22970
    Location:73 → 354
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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