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LOC100888695 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 100888695, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100888695
Gene description
inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC100888695 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145604.1 (22514488..22540971, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003580463.1 (2177..9552)

NW_022145604.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115926115 Neighboring gene insulin-induced gene 2 protein Neighboring gene kelch-like protein 12 Neighboring gene uncharacterized LOC115926116 Neighboring gene sterol O-acyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5
Names
probable N-acetylgalactosaminyltransferase 9
putative N-acetylgalactosaminyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145604.1 Reference Spur_5.0 Primary Assembly

    Range
    22514488..22540971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030990601.1 → XP_030846461.1  inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5

    UniProtKB/TrEMBL
    A0A7M7PAY9
    Conserved Domains (2) summary
    cd02510
    Location:154 → 451
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:467 → 585
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
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