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Rfx regulatory transcription factor Rfx [ Megachile rotundata (alfalfa leafcutting bee) ]

Gene ID: 100876007, updated on 10-Oct-2024

Summary

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Gene symbol
Rfx
Gene description
regulatory transcription factor Rfx
See related
EnsemblRapid:LOC100876007
Gene type
protein coding
RefSeq status
MODEL
Organism
Megachile rotundata
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Megachilidae; Megachilinae; Megachile
Orthologs
fruit fly honey bee all
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Genomic context

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See Rfx in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
101 current MROT_1.0 (GCF_000220905.1) Unplaced Scaffold NW_003797109.1 (1625991..1707779, complement)

NW_003797109.1Genomic Context describing neighboring genes Neighboring gene U3 small nucleolar ribonucleoprotein protein IMP4 Neighboring gene GATA-binding factor C-like Neighboring gene nuclear RNA export factor 1-like Neighboring gene probable serine/threonine-protein kinase clkA Neighboring gene histone-lysine N-methyltransferase SETMAR Neighboring gene traB domain-containing protein Neighboring gene sorting nexin-30-like Neighboring gene uncharacterized LOC100876122 Neighboring gene Cytochrome c heme lyase Neighboring gene vacuolar protein sorting 33B Neighboring gene eukaryotic translation initiation factor 3 subunit C

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003797109.1 Unplaced Scaffold Reference MROT_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein RFX2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Megachile rotundata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MROT_1.0

Genomic

  1. NW_003797109.1 Reference MROT_1.0

    Range
    1625991..1707779 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012280578.1 → XP_012135968.1  DNA-binding protein RFX2 isoform X1

    See identical proteins and their annotated locations for XP_012135968.1

    Related
    XP_012135968.1, XM_012280578.1
    Conserved Domains (1) summary
    pfam02257
    Location:350 → 426
    RFX_DNA_binding; RFX DNA-binding domain

  2. XM_012280579.1 → XP_012135969.1  DNA-binding protein RFX2 isoform X2

    Related
    XP_012135969.1, XM_012280579.1
    Conserved Domains (1) summary
    pfam02257
    Location:346 → 422
    RFX_DNA_binding; RFX DNA-binding domain

  3. XM_012280577.1 → XP_012135967.1  DNA-binding protein RFX2 isoform X1

    See identical proteins and their annotated locations for XP_012135967.1

    Related
    XP_012135967.1, XM_012280577.1
    Conserved Domains (1) summary
    pfam02257
    Location:350 → 426
    RFX_DNA_binding; RFX DNA-binding domain

  4. XM_012280576.1 → XP_012135966.1  DNA-binding protein RFX2 isoform X1

    See identical proteins and their annotated locations for XP_012135966.1

    Related
    XP_012135966.1, XM_012280576.1
    Conserved Domains (1) summary
    pfam02257
    Location:350 → 426
    RFX_DNA_binding; RFX DNA-binding domain

  5. XM_012280582.1 → XP_012135972.1  DNA-binding protein RFX2 isoform X4

    See identical proteins and their annotated locations for XP_012135972.1

    Related
    XP_012135972.1, XM_012280582.1
    Conserved Domains (1) summary
    pfam02257
    Location:321 → 397
    RFX_DNA_binding; RFX DNA-binding domain

  6. XM_012280580.1 → XP_012135970.1  DNA-binding protein RFX2 isoform X3

    Related
    XP_012135970.1, XM_012280580.1
    Conserved Domains (2) summary
    pfam02257
    Location:335 → 411
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:133 → 279
    RFX1_trans_act; RFX1 transcription activation region

  7. XM_012280581.1 → XP_012135971.1  DNA-binding protein RFX2 isoform X4

    See identical proteins and their annotated locations for XP_012135971.1

    Related
    XP_012135971.1, XM_012280581.1
    Conserved Domains (1) summary
    pfam02257
    Location:321 → 397
    RFX_DNA_binding; RFX DNA-binding domain
Nucleotide Protein
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