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XXYLT1-AS1 XXYLT1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100874528, updated on 10-Oct-2023

Summary

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Official Symbol
XXYLT1-AS1provided by HGNC
Official Full Name
XXYLT1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:41153
See related
Ensembl:ENSG00000233303 AllianceGenome:HGNC:41153
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
3q29
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (195094588..195096057)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (197792253..197793722)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (194815317..194816786)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194707036-194707536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194708829-194709329 Neighboring gene uncharacterized LOC105374295 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:194751125-194752122 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:194752123-194753121 Neighboring gene Sharpr-MPRA regulatory region 6289 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194781985-194782758 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:194789061-194790260 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194793833-194794333 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194799753-194800269 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21037 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67503 Neighboring gene xyloside xylosyltransferase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21038 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21040 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21039 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:194815702-194816901 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:194823367-194824566 Neighboring gene uncharacterized LOC124909476 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15030 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:194838030-194838572 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:194838573-194839113 Neighboring gene Sharpr-MPRA regulatory region 14086 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:194846542-194847072 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21042 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21043 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21044 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21045 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21046 Neighboring gene microRNA 3137

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • XXYLT1 antisense RNA 1 (non-protein coding)

Clone Names

  • AC106705.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104188.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106705
    Related
    ENST00000458531.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    195094588..195096057
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    197792253..197793722
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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