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HMGN1P33 high mobility group nucleosome binding domain 1 pseudogene 33 [ Homo sapiens (human) ]

Gene ID: 100874446, updated on 17-Sep-2024

Summary

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Official Symbol
HMGN1P33provided by HGNC
Official Full Name
high mobility group nucleosome binding domain 1 pseudogene 33provided by HGNC
Primary source
HGNC:HGNC:39377
See related
Ensembl:ENSG00000230326 AllianceGenome:HGNC:39377
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See HMGN1P33 in Genome Data Viewer
Location:
Xp22.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (9865093..9865543, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (9447707..9448157, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (9833133..9833583, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373126 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29403 Neighboring gene G protein-coupled receptor 143 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:9732793-9733294 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:9761068-9761591 Neighboring gene shroom family member 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:9793532-9794054 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:9800056-9800700 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:9800701-9801344 Neighboring gene Sharpr-MPRA regulatory region 9039 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:9811123-9812117 Neighboring gene eukaryotic translation initiation factor 5 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:9824841-9825341 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:9827950-9828450 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:9828451-9828951 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:9833462-9834428 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:9834429-9835394 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:9891143-9891644 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:9891645-9892144 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:9895839-9896557 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chrX:9907403-9908602 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:9908687-9909186 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29404 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29405 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29406 Neighboring gene claudin 34 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:9981409-9982292 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:9982293-9983176 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20655 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:10008750-10009284 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:10009285-10009817 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:10014897-10015530 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:10015531-10016163 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:10018119-10018742 Neighboring gene WWC family member 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:10050926-10051426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29407 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:10077459-10078176 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:10078177-10078894 Neighboring gene Sharpr-MPRA regulatory region 7563

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Retroposed copies of the HMG genes: a window to genome dynamics. Strichman-Almashanu LZ, et al. Genome Res, 2003 May. PMID 12727900, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_032276.1 

    Range
    101..551
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    9865093..9865543 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    9447707..9448157 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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