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ARHGAP31-AS1 ARHGAP31 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100874246, updated on 10-Oct-2023

Summary

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Official Symbol
ARHGAP31-AS1provided by HGNC
Official Full Name
ARHGAP31 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:41235
See related
Ensembl:ENSG00000241155 AllianceGenome:HGNC:41235
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See ARHGAP31-AS1 in Genome Data Viewer
Location:
3q13.33
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (119314293..119322760, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (122034004..122042471, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (119033140..119041607, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene beta-1,4-galactosyltransferase 4 Neighboring gene B4GALT4 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14625 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14626 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:118975541-118976279 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20294 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20295 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14627 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20296 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20297 Neighboring gene Sharpr-MPRA regulatory region 6621 Neighboring gene Rho GTPase activating protein 31 Neighboring gene ribosomal protein S26 pseudogene 21 Neighboring gene NANOG hESC enhancer GRCh37_chr3:119028728-119029229 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr3:119041278-119042135 and GRCh37_chr3:119042136-119042992 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20298 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20299 Neighboring gene RNA, U6 small nuclear 1127, pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:119068069-119068893 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:119070415-119071112 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:119079699-119080370 Neighboring gene uncharacterized LOC124906273

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • ARHGAP31 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046748.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092981
    Related
    ENST00000466292.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    119314293..119322760 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    122034004..122042471 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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