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TBL1XR1-AS1 TBL1XR1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100874217, updated on 10-Oct-2023

Summary

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Official Symbol
TBL1XR1-AS1provided by HGNC
Official Full Name
TBL1XR1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:41243
See related
Ensembl:ENSG00000231310 AllianceGenome:HGNC:41243
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
3q26.32
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (177037405..177047923)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (179840376..179850894)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (176755193..176765711)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:176544827-176545328 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:176545329-176545828 Neighboring gene long intergenic non-protein coding RNA 1209 Neighboring gene MT-ND5 pseudogene 15 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:176755168-176756367 Neighboring gene Sharpr-MPRA regulatory region 5683 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:176759414-176759658 Neighboring gene TBL1X/Y related 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20835 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20836 Neighboring gene RNA, U6 small nuclear 681, pseudogene Neighboring gene Sharpr-MPRA regulatory region 13561 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20837 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:176870313-176870813 Neighboring gene Sharpr-MPRA regulatory region 10853 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:176911488-176912078 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14902 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:176914847-176915356 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:176915357-176915864 Neighboring gene uncharacterized LOC107986053

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • TBL1XR1 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_174966.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC023235, KF457713
    Related
    ENST00000617758.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    177037405..177047923
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    179840376..179850894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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