U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

B4GALT4-AS1 B4GALT4 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100874201, updated on 10-Oct-2023

Summary

Official Symbol
B4GALT4-AS1provided by HGNC
Official Full Name
B4GALT4 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40090
See related
Ensembl:ENSG00000240254 AllianceGenome:HGNC:40090
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in urinary bladder (RPKM 13.6), duodenum (RPKM 12.4) and 25 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
3q13.32
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (119226486..119290666)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (121946182..122010372)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (118945333..119009513)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene testis expressed 55 Neighboring gene uroplakin 1B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:118925194-118925720 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:118925721-118926245 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:118944135-118944307 Neighboring gene beta-1,4-galactosyltransferase 4 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14625 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14626 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:118975541-118976279 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20294 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20295 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14627 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20296 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20297 Neighboring gene Sharpr-MPRA regulatory region 6621 Neighboring gene Rho GTPase activating protein 31 Neighboring gene NANOG hESC enhancer GRCh37_chr3:119028728-119029229 Neighboring gene ribosomal protein S26 pseudogene 21 Neighboring gene ARHGAP31 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr3:119041278-119042135 and GRCh37_chr3:119042136-119042992

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046574.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC083800, AC092981
    Related
    ENST00000470790.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    119226486..119290666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    121946182..122010372
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)