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LZTS1-AS1 LZTS1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100874051, updated on 10-Oct-2023

Summary

Official Symbol
LZTS1-AS1provided by HGNC
Official Full Name
LZTS1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:43630
See related
Ensembl:ENSG00000253733 AllianceGenome:HGNC:43630
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LZTS1-AS1 in Genome Data Viewer
Location:
8p21.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (20275773..20290458)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (20540849..20555543)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (20133284..20147969)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18971 Neighboring gene ATPase H+ transporting V1 subunit B2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27064 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:20087870-20088370 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:20091705-20092214 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:20092215-20092724 Neighboring gene RNA, U6 small nuclear 892, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:20106535-20107076 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:20107077-20107620 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:20112843-20113026 Neighboring gene Sharpr-MPRA regulatory region 10012 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27065 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:20129385-20129920 Neighboring gene leucine zipper tumor suppressor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18972 Neighboring gene RNA, 5S ribosomal pseudogene 257 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:20186237-20186853 Neighboring gene uncharacterized LOC105379314 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr8:20210567-20211189 Neighboring gene NANOG hESC enhancer GRCh37_chr8:20212340-20212863 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:20241249-20241750 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:20269567-20270766 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_102562 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:20290912-20291613 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_102576 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:20315593-20316153 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:20316154-20316713 Neighboring gene NANOG hESC enhancer GRCh37_chr8:20350867-20351405 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:20364504-20365243 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:20365244-20365982 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:20365983-20366722 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:20367115-20367326 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_102632 Neighboring gene small nucleolar RNA, C/D box 3F

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • LZTS1 antisense RNA 1 (non-protein coding)

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047509.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC023403, AC025853
    Related
    ENST00000523103.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    20275773..20290458
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    20540849..20555543
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)