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PLCH1-AS2 PLCH1 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 100874036, updated on 10-Oct-2023

Summary

Official Symbol
PLCH1-AS2provided by HGNC
Official Full Name
PLCH1 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:41232
See related
Ensembl:ENSG00000242925 AllianceGenome:HGNC:41232
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.4) See more
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Genomic context

See PLCH1-AS2 in Genome Data Viewer
Location:
3q25.31
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (155485803..155487121)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (158259748..158261067)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (155203592..155204910)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 715, pseudogene Neighboring gene PLCH1 antisense RNA 1 Neighboring gene phospholipase C eta 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14832 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:155229919-155230575 Neighboring gene uncharacterized LOC124906297 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:155336094-155336620 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:155336621-155337145 Neighboring gene NANOG hESC enhancer GRCh37_chr3:155337230-155337774 Neighboring gene ribosomal protein L6 pseudogene 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146955.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX094640
    Related
    ENST00000472913.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    155485803..155487121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    158259748..158261067
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)