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LMLN-AS1 LMLN antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100873947, updated on 10-Oct-2023

Summary

Official Symbol
LMLN-AS1provided by HGNC
Official Full Name
LMLN antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40738
See related
Ensembl:ENSG00000232832 AllianceGenome:HGNC:40738
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 12.2), thyroid (RPKM 5.8) and 25 other tissues See more
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Genomic context

Location:
3q29
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (198038321..198039467, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (200770707..200771853, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (197765192..197766338, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene IQ motif containing G Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:197676763-197677545 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:197678329-197679110 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197685865-197686365 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15095 Neighboring gene MPRA-validated peak4998 silencer Neighboring gene ribosomal protein L35a Neighboring gene leishmanolysin like peptidase Neighboring gene MPRA-validated peak4999 silencer Neighboring gene RNA, U6 small nuclear 621, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr3:197777783-197777969 Neighboring gene ankyrin repeat domain 18D, pseudogene Neighboring gene Sharpr-MPRA regulatory region 12303 Neighboring gene RNA, U6 small nuclear 821, pseudogene Neighboring gene FSHD region gene 2 family member F, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046669.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC135893
    Related
    ENST00000423460.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    198038321..198039467 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    200770707..200771853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)