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LPP-AS1 LPP antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100873917, updated on 10-Oct-2023

Summary

Official Symbol
LPP-AS1provided by HGNC
Official Full Name
LPP antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40346
See related
Ensembl:ENSG00000224563 AllianceGenome:HGNC:40346
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
3q28
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (188562237..188568666, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (191379779..191386223, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (188280025..188286454, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:187870480-187871380 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14995 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:187873180-187874078 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:187882030-187883229 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:187897095-187897707 Neighboring gene LPP antisense RNA 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20975 Neighboring gene uncharacterized LOC401105 Neighboring gene LIM domain containing preferred translocation partner in lipoma Neighboring gene Sharpr-MPRA regulatory region 910 Neighboring gene uncharacterized LOC124906316 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:188353620-188354172 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:188354173-188354724 Neighboring gene microRNA 28

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046623.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC063932
    Related
    ENST00000434996.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    188562237..188568666 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    191379779..191386223 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)