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RNU5A-5P RNA, U5A small nuclear 5, pseudogene [ Homo sapiens (human) ]

Gene ID: 100873835, updated on 17-Sep-2024

Summary

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Official Symbol
RNU5A-5Pprovided by HGNC
Official Full Name
RNA, U5A small nuclear 5, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:42525
See related
Ensembl:ENSG00000222986 AllianceGenome:HGNC:42525
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU5A-5P in Genome Data Viewer
Location:
1q42.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (231670635..231670750)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (231053844..231053959)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (231806381..231806496)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:231663972-231665171 Neighboring gene TSNAX-DISC1 readthrough (NMD candidate) Neighboring gene translin associated factor X Neighboring gene long intergenic non-protein coding RNA 582 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2731 Neighboring gene MPRA-validated peak764 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1954 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1955 Neighboring gene MPRA-validated peak765 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:231787054-231787554 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:231787555-231788055 Neighboring gene DISC1 scaffold protein Neighboring gene ReSE screen-validated silencer GRCh37_chr1:231830220-231830402 Neighboring gene MPRA-validated peak767 silencer Neighboring gene uncharacterized LOC105373170 Neighboring gene NANOG hESC enhancer GRCh37_chr1:231967105-231967615 Neighboring gene disrupted in schizophrenia 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1956 Neighboring gene DISC1 intronic transcript 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_032615.1 

    Range
    101..216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    231670635..231670750
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    231053844..231053959
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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