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RNA5SP77 RNA, 5S ribosomal pseudogene 77 [ Homo sapiens (human) ]

Gene ID: 100873311, updated on 17-Sep-2024

Summary

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Official Symbol
RNA5SP77provided by HGNC
Official Full Name
RNA, 5S ribosomal pseudogene 77provided by HGNC
Primary source
HGNC:HGNC:42854
See related
Ensembl:ENSG00000202264 AllianceGenome:HGNC:42854
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RN5S77
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Genomic context

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See RNA5SP77 in Genome Data Viewer
Location:
1q42.13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (227561181..227561300)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (226750119..226750238)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (227748882..227749001)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:227681476-227682162 Neighboring gene tubulin beta 8 class VIII pseudogene 10 Neighboring gene uncharacterized LOC105373122 Neighboring gene tubulin beta 8 class VIII pseudogene 9 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:227719584-227720783 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1897 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:227735098-227735598 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2677 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2678 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2679 Neighboring gene zinc finger protein 678 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:227767411-227767659 Neighboring gene mitochondrial ribosomal protein L57 pseudogene 2 Neighboring gene MPRA-validated peak744 silencer Neighboring gene family with sequence similarity 133 member A pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, 5S ribosomal 77

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033425.1 

    Range
    101..220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    227561181..227561300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    226750119..226750238
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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