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Scgdelta sarcoglycan delta [ Apis florea (little honeybee) ]

Gene ID: 100868864, updated on 10-Oct-2024

Summary

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Gene symbol
Scgdelta
Gene description
sarcoglycan delta
See related
EnsemblRapid:LOC100868864
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis florea
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Orthologs
fruit fly honey bee all
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Genomic context

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See Scgdelta in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Aflo_1.1 (GCF_000184785.3) Unplaced Scaffold NW_003789703.1 (788684..1009464, complement)

NW_003789703.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116413890 Neighboring gene protein Cep78 homolog Neighboring gene uncharacterized LOC105737468 Neighboring gene uncharacterized LOC116413905 Neighboring gene epoxide hydrolase 4-like Neighboring gene WD repeat and HMG-box DNA-binding protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003789703 Unplaced Scaffold Reference Aflo_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apis florea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aflo_1.1 Primary Assembly

Genomic

  1. NW_003789703.1 Reference Aflo_1.1 Primary Assembly

    Range
    788684..1009464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003691272.3 → XP_003691320.2  zeta-sarcoglycan

    Related
    XP_003691320.2, XM_003691272.3
    Conserved Domains (1) summary
    pfam04790
    Location:134 → 404
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases