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LOC100865703 probable tRNA (uracil-O(2)-)-methyltransferase [ Apis florea (little honeybee) ]

Gene ID: 100865703, updated on 10-Oct-2024

Summary

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Gene symbol
LOC100865703
Gene description
probable tRNA (uracil-O(2)-)-methyltransferase
See related
EnsemblRapid:LOC100865703
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis florea
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Orthologs
fruit fly honey bee all
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Genomic context

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See LOC100865703 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Aflo_1.1 (GCF_000184785.3) Unplaced Scaffold NW_003790258.1 (79050..82087, complement)

NW_003790258.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein at 19D Neighboring gene mutS protein homolog 4-like Neighboring gene zinc finger protein 236 Neighboring gene FAD synthase-like Neighboring gene TOX high mobility group box family member 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003790258 Unplaced Scaffold Reference Aflo_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genes involved in convergent evolution of eusociality in bees. Woodard SH, et al. Proc Natl Acad Sci U S A, 2011 May 3. PMID 21482769, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (uridine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable tRNA (uracil-O(2)-)-methyltransferase
Names
UPF0631 protein C17orf108 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apis florea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aflo_1.1 Primary Assembly

Genomic

  1. NW_003790258.1 Reference Aflo_1.1 Primary Assembly

    Range
    79050..82087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012485909.2 → XP_012341363.1  probable tRNA (uracil-O(2)-)-methyltransferase

    Related
    XP_012341363.1, XM_012485909.2
    Conserved Domains (2) summary
    pfam07757
    Location:209 → 320
    AdoMet_MTase; Predicted AdoMet-dependent methyltransferase
    pfam09321
    Location:419 → 562
    DUF1978; Domain of unknown function (DUF1978)
Nucleotide Protein
Heading Accession and Version

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