Rbmyf6 RNA binding motif protein Y-linked family member 6 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Rbmyf6provided by MGI
Official Full Name: RNA binding motif protein Y-linked family member 6provided by MGI
Primary source: MGI:MGI:5435048
See related: Ensembl:ENSMUSG00000094511 AllianceGenome:MGI:5435048
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Gm21693
Summary: Predicted to enable RNA binding activity. Predicted to be involved in male gonad development and positive regulation of mRNA splicing, via spliceosome. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of spliceosomal complex. Orthologous to human RBMY1B (RNA binding motif protein Y-linked family 1 member B). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Restricted expression toward testis adult (RPKM 1.7) See more
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Genomic context

Location:: Ypter; Y

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	Y	NC_000087.8 (3326746..3345329, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	Y	NC_000087.7 (3326746..3345329, complement)

Chromosome Y - NC_000087.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

Rbmy1a1 (e-PCR)
- UniSTS:479242

NoName (e-PCR)
- UniSTS:491358

G65761 (e-PCR)
- UniSTS:225908

RbmY1a1 (e-PCR), detects polymorphism
- UniSTS:256400

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in male gonad development	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of mRNA splicing, via spliceosome	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in nucleolus	ISO Inferred from Sequence Orthology more info
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info
part_of spliceosomal complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC100862383

Names: RNA-binding motif protein, Y chromosome, family 1 member

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001270514.1 → NP_001257443.1 uncharacterized protein LOC100862383

See identical proteins and their annotated locations for NP_001257443.1

Status: PREDICTED

Source sequence(s)

AC160968

Consensus CDS

CCDS85839.1

UniProtKB/TrEMBL

J3QK27

Related

ENSMUSP00000139784.2, ENSMUST00000186047.7

Conserved Domains (2) summary

COG0724
Location:9 → 85

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

cl17169
Location:7 → 86

RRM_SF; RNA recognition motif (RRM) superfamily