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LINC00563 long intergenic non-protein coding RNA 563 [ Homo sapiens (human) ]

Gene ID: 100861554, updated on 17-Sep-2024

Summary

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Official Symbol
LINC00563provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 563provided by HGNC
Primary source
HGNC:HGNC:43707
See related
Ensembl:ENSG00000261097 AllianceGenome:HGNC:43707
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LINC00563 in Genome Data Viewer
Location:
13q14.13
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (46296445..46297844, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (45517451..45518850, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (46870580..46871979, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 63 Neighboring gene uncharacterized LOC105370194 Neighboring gene ABITRAM pseudogene 1 Neighboring gene uncharacterized LOC124903170 Neighboring gene NANOG hESC enhancer GRCh37_chr13:46867593-46868094 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:46870567-46871766 Neighboring gene NANOG hESC enhancer GRCh37_chr13:46893525-46894073 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:46895131-46895630 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5320 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7694 Neighboring gene rubicon like autophagy enhancer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7695 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7696 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7697 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7698 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7699 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7700 Neighboring gene RNA, U2 small nuclear 6, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7701 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7702 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7703 Neighboring gene RNA, U6 small nuclear 68, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047493.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    U79295
    Related
    ENST00000566370.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    46296445..46297844 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    45517451..45518850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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