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LINC00489 long intergenic non-protein coding RNA 489 [ Homo sapiens (human) ]

Gene ID: 100861522, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00489provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 489provided by HGNC
Primary source
HGNC:HGNC:43426
See related
Ensembl:ENSG00000225759 AllianceGenome:HGNC:43426
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
20q11.23
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (37619298..37623119, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (39343403..39347225, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (36247700..36251521, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1746 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17848 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:36219641-36220140 Neighboring gene glutaredoxin pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17849 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:36280377-36280529 Neighboring gene uncharacterized LOC100287792 Neighboring gene uncharacterized LOC105372609

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047461.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL109614, DB341379
    Related
    ENST00000457816.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    37619298..37623119 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    39343403..39347225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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