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SPACA3 sperm acrosome associated 3 [ Capra hircus (goat) ]

Gene ID: 100860900, updated on 8-Mar-2024

Summary

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Gene symbol
SPACA3
Gene description
sperm acrosome associated 3
See related
EnsemblRapid:ENSCHIG00000032845
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Also known as
SLLP1
Orthologs
human mouse all
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Genomic context

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See SPACA3 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 19 NC_030826.1 (16907197..16917524, complement)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 19 NC_022311.1 (16608468..16612866, complement)

Chromosome 19 - NC_030826.1Genomic Context describing neighboring genes Neighboring gene C-C motif chemokine 2 Neighboring gene acid sensing ion channel subunit 2 Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene transmembrane protein 98

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysozyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fusion of sperm to egg plasma membrane involved in single fertilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in acrosomal vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sperm flagellum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sperm acrosome membrane-associated protein 3
Names
sperm lysozyme like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001286975.1 → NP_001273904.1  sperm acrosome membrane-associated protein 3 precursor

    See identical proteins and their annotated locations for NP_001273904.1

    Status: VALIDATED

    Source sequence(s)
    HM038035
    UniProtKB/TrEMBL
    D7R6C7
    Related
    ENSCHIP00000048850.1, ENSCHIT00000056607.1
    Conserved Domains (1) summary
    cd16897
    Location:37 → 161
    LYZ_C; C-type lysozyme

RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030826.1 Reference ASM170441v1 Primary Assembly

    Range
    16907197..16917524 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018063567.1 → XP_017919056.1  sperm acrosome membrane-associated protein 3 isoform X1

    UniProtKB/TrEMBL
    D7R6C7
    Conserved Domains (1) summary
    cd16897
    Location:37 → 161
    LYZ_C; C-type lysozyme
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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