U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

STAMBPL1 STAM binding protein like 1 [ Gallus gallus (chicken) ]

Gene ID: 100859108, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Symbol
STAMBPL1provided by CGNC
Full Name
STAM binding protein like 1provided by CGNC
Primary source
CGNC:66087
See related
Ensembl:ENSGALG00010022022
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See STAMBPL1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (19973989..19993560)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (19960910..19980481)

Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 22 Neighboring gene lipase member M-like 4 Neighboring gene actin, alpha 2, smooth muscle, aorta Neighboring gene Fas cell surface death receptor Neighboring gene cholesterol 25-hydroxylase

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal-dependent deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein K63-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
AMSH-like protease
XP_015143899.2
XP_015143900.2
XP_040531169.1
XP_040531170.1
XP_040531171.1
XP_040531172.1
XP_040559047.1
XP_040559048.1
XP_046776592.1
XP_046776593.1
XP_046776594.1
XP_046799109.1
XP_046799110.1
XP_046799111.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    19973989..19993560
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040703113.2 → XP_040559047.1  AMSH-like protease

    UniProtKB/TrEMBL
    A0A8V0ZLD2
    Conserved Domains (2) summary
    cd08066
    Location:283 → 453
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    COG0544
    Location:123 → 215
    Tig; FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

  2. XM_015288413.4 → XP_015143899.2  AMSH-like protease

    UniProtKB/TrEMBL
    A0A8V0ZLD2
    Related
    ENSGALP00010032247.1, ENSGALT00010053520.1
    Conserved Domains (2) summary
    cd08066
    Location:283 → 453
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    COG0544
    Location:123 → 215
    Tig; FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

  3. XM_046943155.1 → XP_046799111.1  AMSH-like protease

    UniProtKB/TrEMBL
    A0A8V0ZLD2

  4. XM_046943153.1 → XP_046799109.1  AMSH-like protease

    UniProtKB/TrEMBL
    A0A8V0ZLD2

  5. XM_040703114.2 → XP_040559048.1  AMSH-like protease

    UniProtKB/TrEMBL
    A0A8V0ZLD2
    Conserved Domains (2) summary
    cd08066
    Location:283 → 453
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    COG0544
    Location:123 → 215
    Tig; FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

  6. XM_046943154.1 → XP_046799110.1  AMSH-like protease

    UniProtKB/TrEMBL
    A0A8V0ZLD2

  7. XM_015288414.4 → XP_015143900.2  AMSH-like protease

    UniProtKB/TrEMBL
    A0A8V0ZLD2
    Conserved Domains (2) summary
    cd08066
    Location:283 → 453
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    COG0544
    Location:123 → 215
    Tig; FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    19960910..19980481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040675236.2 → XP_040531170.1  AMSH-like protease

    Conserved Domains (3) summary
    cd08066
    Location:283 → 453
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    PRK01490
    Location:137 → 211
    tig; trigger factor; Provisional
    pfam08969
    Location:46 → 149
    USP8_dimer; USP8 dimerization domain

  2. XM_040675235.2 → XP_040531169.1  AMSH-like protease

    Conserved Domains (3) summary
    cd08066
    Location:283 → 453
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    PRK01490
    Location:137 → 211
    tig; trigger factor; Provisional
    pfam08969
    Location:46 → 149
    USP8_dimer; USP8 dimerization domain

  3. XM_046920638.1 → XP_046776594.1  AMSH-like protease

  4. XM_046920636.1 → XP_046776592.1  AMSH-like protease

  5. XM_040675238.2 → XP_040531172.1  AMSH-like protease

    Conserved Domains (3) summary
    cd08066
    Location:283 → 453
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    PRK01490
    Location:137 → 211
    tig; trigger factor; Provisional
    pfam08969
    Location:46 → 149
    USP8_dimer; USP8 dimerization domain

  6. XM_046920637.1 → XP_046776593.1  AMSH-like protease

  7. XM_040675237.2 → XP_040531171.1  AMSH-like protease

    Conserved Domains (3) summary
    cd08066
    Location:283 → 453
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    PRK01490
    Location:137 → 211
    tig; trigger factor; Provisional
    pfam08969
    Location:46 → 149
    USP8_dimer; USP8 dimerization domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.