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NIPAL3 NIPA like domain containing 3 [ Canis lupus familiaris (dog) ]

Gene ID: 100856104, updated on 17-Aug-2024

Summary

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Official Symbol
NIPAL3provided by VGNC
Official Full Name
NIPA like domain containing 3provided by VGNC
Primary source
VGNC:VGNC:43817
See related
Ensembl:ENSCAFG00845014315
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
NPAL3
Orthologs
human mouse all
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Genomic context

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See NIPAL3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 2 NC_051806.1 (75746842..75797511, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 2 NC_006584.4 (71755754..71809183, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 2 NC_049223.1 (74578587..74632241, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 2 NC_049262.1 (72566483..72620120, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 2 NC_049743.1 (73573939..73627377, complement)

Chromosome 2 - NC_051806.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102154412 Neighboring gene RCAN family member 3 Neighboring gene sperm tail PG-rich repeat containing 1 Neighboring gene grainyhead like transcription factor 3 Neighboring gene uncharacterized LOC111093520

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables magnesium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in magnesium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: NIPA-like protein 3; NIPA-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051806.1 Reference ROS_Cfam_1.0

    Range
    75746842..75797511 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038659893.1 → XP_038515821.1  NIPA-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L421, A0A8C0LT06, A0A8C0LXT0, A0A8I3NHQ4
    Related
    ENSCAFP00845020207.1, ENSCAFT00845025645.1
    Conserved Domains (1) summary
    cl23754
    Location:32 → 326
    EamA; EamA-like transporter family

  2. XM_038659894.1 → XP_038515822.1  NIPA-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LSS2, A0A8C0LZ48, A0A8I3NNG7, A0A8I3NU75
    Conserved Domains (1) summary
    cl23754
    Location:32 → 326
    EamA; EamA-like transporter family

  3. XM_038659895.1 → XP_038515823.1  NIPA-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8C0LSS2, A0A8C0LZ48, A0A8I3NNG7, A0A8I3NU75
    Related
    ENSCAFP00845020247.1, ENSCAFT00845025693.1
    Conserved Domains (1) summary
    cl23754
    Location:32 → 326
    EamA; EamA-like transporter family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049262.1 Alternate UMICH_Zoey_3.1

    Range
    72566483..72620120 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038470727.1 → XP_038326655.1  LOW QUALITY PROTEIN: NIPA-like protein 3 isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049743.1 Alternate UNSW_CanFamBas_1.0

    Range
    73573939..73627377 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038595817.1 → XP_038451745.1  NIPA-like protein 3 isoform X1

    Conserved Domains (1) summary
    cl23754
    Location:32 → 326
    EamA; EamA-like transporter family

  2. XM_038595818.1 → XP_038451746.1  NIPA-like protein 3 isoform X2

    Conserved Domains (1) summary
    cl23754
    Location:32 → 326
    EamA; EamA-like transporter family

  3. XM_038595819.1 → XP_038451747.1  NIPA-like protein 3 isoform X3

    Conserved Domains (1) summary
    cl23754
    Location:32 → 326
    EamA; EamA-like transporter family

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049223.1 Alternate UU_Cfam_GSD_1.0

    Range
    74578587..74632241 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038531588.1 → XP_038387516.1  LOW QUALITY PROTEIN: NIPA-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L421, A0A8C0LT06, A0A8C0LXT0, A0A8I3NHQ4
    Conserved Domains (1) summary
    cl23754
    Location:32 → 326
    EamA; EamA-like transporter family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006584.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    71755754..71809183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003638924.5 → XP_003638972.2  NIPA-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L421, A0A8C0LT06, A0A8C0LXT0, A0A8I3NHQ4
    Conserved Domains (1) summary
    cl23754
    Location:32 → 326
    EamA; EamA-like transporter family

  2. XM_022413283.2 → XP_022268991.1  NIPA-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LSS2, A0A8C0LZ48, A0A8I3NNG7, A0A8I3NU75
    Conserved Domains (1) summary
    cl23754
    Location:32 → 326
    EamA; EamA-like transporter family

  3. XM_005617799.4 → XP_005617856.1  NIPA-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8C0LSS2, A0A8C0LZ48, A0A8I3NNG7, A0A8I3NU75
    Conserved Domains (1) summary
    cl23754
    Location:32 → 326
    EamA; EamA-like transporter family
Nucleotide Protein
Heading Accession and Version

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