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LOC100855558 hemoglobin subunit alpha-like [ Canis lupus familiaris (dog) ]

Gene ID: 100855558, updated on 6-Jun-2024

Summary

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Gene symbol
LOC100855558
Gene description
hemoglobin subunit alpha-like
See related
Ensembl:ENSCAFG00845000903
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

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See LOC100855558 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (40671209..40672537, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (41591692..41593018, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (40798910..40800239, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (40359320..40360638, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (40320283..40321596, complement)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene hemoglobin subunit theta 1 Neighboring gene hemoglobin subunit alpha-like Neighboring gene hemoglobin subunit zeta-like Neighboring gene hemoglobin subunit mu

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Adaptive Changes in Hemoglobin Function in High-Altitude Tibetan Canids Were Derived via Gene Conversion and Introgression. Signore AV, et al. Mol Biol Evol, 2019 Oct 1. PMID 31362306, Free PMC Article
  2. Structure of Greyhound hemoglobin: origin of high oxygen affinity. Bhatt VS, et al. Acta Crystallogr D Biol Crystallogr, 2011 May. PMID 21543841
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables haptoglobin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables organic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxygen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxygen carrier activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hydrogen peroxide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oxygen transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in blood microparticle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of haptoglobin-hemoglobin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of hemoglobin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hemoglobin subunit alpha-like
Names
hemoglobin subunit alpha1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001270885.1 → NP_001257814.1  hemoglobin subunit alpha-like

    Status: PROVISIONAL

    Source sequence(s)
    DN415010
    UniProtKB/Swiss-Prot
    P60529
    UniProtKB/TrEMBL
    A0A5B8JID5, A0A5B8JM65, A0A8C0K8B3, A0A8C0MX81, A0A8P0NPV8
    Related
    ENSCAFP00845001261.1, ENSCAFT00845001592.1
    Conserved Domains (1) summary
    cd08927
    Location:3 → 142
    Hb-alpha_like; Hemoglobin alpha, zeta, mu, theta, and related Hb subunits

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    40671209..40672537 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    40359320..40360638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    40320283..40321596 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    40798910..40800239 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    41591692..41593018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials